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Journal articles
Position-dependent roles of somatic cells in phototaxis of Volvox,
Keigo Harada, Yukariko Komasaka, Keisuke Yamada, Takumi Iizuka, Minato Otani, and Yoshihiro Murayama
PNAS Nexus, 3, pgae444 (2024)
https://doi.org/10.1093/pnasnexus/pgae444
Deformation-Dependent Nonlinear Relaxation in Dense DNA Solutions,
Akinori Miyamoto and Yoshihiro Murayama
J. Phys. Soc. Jpn. 91, 073801 (2022)
https://doi.org/10.7566/JPSJ.91.073801
Cyclic Micropipette Aspiration Reveals Viscoelastic Change of a Gelatin Microgel Prepared Inside a Lipid Droplet,
Atsushi Sakai, Yoshihiro Murayama, and Miho Yanagisawa
Langmuir 36, 5186-5191 (2020)
https://doi.org/10.1021/acs.langmuir.0c00428
Length dependence of viscoelasticity of entangled-DNA solution with and without external stress,
Masaya Tanoguchi and Yoshihiro Murayama
AIP Advances 8, 105218 (2018), chosen as an "Editor's Pick"
https://doi.org/10.1063/1.5048821
Dynamic Features of Plectoneme Formation of Twisted DNA at Low Force,
Kotaro Yoshida, Daisuke Ando, Masahiro Makuta, and Yoshihiro Murayama
J. Phys. Soc. Jpn. 87, 093801 (2018)
https://doi.org/10.7566/JPSJ.87.093801
Increasing Elasticity through Changes in the Secondary Structure of Gelatin by Gelation in a Microsized Lipid Space,
Atsushi Sakai, Yoshihiro Murayama, Kei Fujiwara, Takahiro Fujisawa, Saori Sasaki, Satoru Kidoaki, and Miho Yanagisawa
ACS Central Science 4, 4, 477-483 (2018)
https://doi.org/10.1021/acscentsci.7b00625
DNA cytoskeleton for stabilizing artificial cells,
Chikako Kurokawa, Kei Fujiwara, Masamune Morita, Ibuki Kawamata, Yui Kawagishi, Atsushi Sakai,Yoshihiro Murayama, Shin-ichiro M. Nomura, Satoshi Murata, Masahiro Takinoue, and Miho Yanagisawa
Proc Natl Acad Sci USA 114, 7228-7233 (2017)
https://doi.org/10.1073/pnas.1702208114
Simple method to measure and analyze the fluctuations of a small particle in biopolymer solutions,
Masafumi Kuroda and Yoshihiro Murayama,
Rev. Sci. Instrum. 86, 125105 (2015)
https://doi.org/10.1063/1.4936879
Fluctuations and Responses in Stochastic Motions of Volvox Colonies,
Masashi Ozaki and Yoshihiro Murayama,
Current Physical Chemistry, 5, (2015), 64-72.
The published manuscript is available at EurekaSelect via
https://doi.org/10.2174/1877946805666150707182956
Force-Fluctuation Relation of a Single DNA Molecule,
Takeshi Baba, Takahiro Sakaue, and Yoshihiro Murayama,
Macromolecules, 45, (2012), 2857-2862.
https://doi.org/10.1021/ma300019a
Experimental study on the kinetics of granular gases under microgravity,
Soichi Tatsumi, Yoshihiro Murayama, Hisao Hayakawa, and Masaki Sano,
J. Fluid Mech. 641 (2009), 521-539.
Probing force-induced unfolding intermediates of a single staphylococcal nuclease molecule and the effect of ligand binding,
Takaaki Ishii, Yoshihiro Murayama, Atsuto Katano, Kosuke Maki, Kunihiro Kuwajima, Masaki Sano,
Biochem. Biophys. Res. Comm. 375 (2008), 586-591.
Dynamic force spectroscopy of a single
condensed DNA ,
Yoshihiro Murayama, Hirofumi Wada, and
Masaki Sano,
EPL 79 (2007), 58001.
Experimental Test of a New Equality:
Measuring Heat Dissipation in an Optically Driven Colloidal
System,
Shoichi Toyabe, Hong-Ren Jiang, Takenobu
Nakamura, Yoshihiro Murayama, and Masaki Sano,
Phys. Rev. E 75
(2007), 011122.
Elastic convection in vibrated viscoplastic
fluid,
Hayato Shiba, Jori Ruppert-Felsot, Yoshiki
Takahashi, Yoshihiro Murayama, Qi Ouyang, and Masaki Sano,
Phys.
Rev. Lett. 98 (2007), 044501.
Nonlinear elasticity of single collapsed
polyelectrolytes,
Hirofumi Wada, Yoshihiro Murayama,
and Masaki Sano,
Phys. Rev. E 72 (2005), 041803(1-8).
Exchange of Counterions in DNA
Condensation,
Yoshihiro Murayama, and Masaki Sano,
Biopolymers 77 (2005), 354-360.
Elastic Response of Single DNA Molecules
Exhibits a Reentrant Collapsing Transition,
Yoshihiro
Murayama, Yoshihiko Sakamaki, and Masaki Sano,
Phys. Rev. Lett.
90 (2003), 018102(1-4).
Model of elastic response of single DNA
molecules in collapsing transition,
Hirofumi Wada,
Yoshihiro Murayama, and Masaki Sano,
Phys. Rev. E 66 (2002),
061912(1-10).
Force Measurements of Single DNA Molecules
in the Collapsing Transition,
Yoshihiro Murayama and
Masaki Sano,
J. Phys. Soc. Jpn. 70-2 (2001), 345-348.
Transition from Gaussian to Non-Gaussian
Velocity Distribution Functions in a Vibrated Granular Bed,
Yoshihiro Murayama and Masaki Sano,
J. Phys. Soc. Jpn. 67-6
(1998) , 1826-1829.
Conference
proceedings
Detection of change in elastic properties of a stretched DNA by using correlation functions of fluctuations,
Yoshihiro Murayama, Yusuke Yogiashi, Takuya Iwamoto, Yoshitake Mitsuhashi, and Hirofumi Homma,
AIP Conference Proceedings 1518 (2013), 619-622.
https://doi.org/10.1063/1.4794645
Experimental Study of the Freely Evolving Granular Gas under Microgravity Condition,
Soichi Tatsumi, Yoshihiro Murayama, and Masaki Sano,
AIP Conference Proceedings 1027 (2008), 923-925.
https://doi.org/10.1063/1.2964895
Unfolding Dynamics of Single Collapsed DNA
Molecules,
Yoshihiro Murayama, Hirofumi Wada, Ryo
Ishida, and Masaki Sano,
Prog. Theo. Phys. Suppl. No. 165
(2006), 144-163.
Visualization during stick-release and
plateau responses of collapsed DNA,
Ryo Ishida,
Yoshihiro Murayama, and Masaki Sano,
Prog. Theo. Phys. Suppl.
No. 161 (2006), 282-285.
Force Measurements of Single DNA Molecules
in Reentrant Collapsing Transition,
Yoshihiro Murayama
and Masaki Sano,
Proceedings of the WSEAS and IASME Conferences,
2004 WSEAS Int. Conf. on MATHEMATICAL BIOLOGY and ECOLOGY, Corfu,
Greece, August 17-19, (2004) (CD-ROM), 488-181 (1-3).
Simple model for mechanical responses of collapsed DNA chains,
Hirofumi Wada, Yoshihiro Murayama
and Masaki Sano,
PHYSICS OF COMPLEX SYSTEMS (NEW ADVANCES AND PERSPECTIVES), 155 (2004) 489-494.
Reentrant Collapsing Transition of Single
DNA Molecules: Elastic Response Depending on Spermidine
Concentration,
Yoshihiro Murayama and Masaki Sano, Slow
Dynamics in Complex Systems,
AIP Conference Proceedings,
708, (2004),
324-325. |
